Controller¶
Orchestration: reads the YAML recipe, loads HDF5 under multiprocessing, and dispatches pipeline steps per run.
XSpect.controller.pipeline
¶
Pipeline: the user-facing entry point for YAML-driven analysis.
Usage: pipeline = Pipeline.from_yaml("my_analysis.yaml") pipeline.run(cores=16, batch_size=2000) results = pipeline.results
Pipeline
¶
YAML-driven analysis pipeline.
Parses a YAML config, creates experiment/run objects, dispatches registered steps, and collects results.
Source code in XSpect/controller/pipeline.py
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from_yaml(path)
classmethod
¶
Create a Pipeline from a YAML configuration file.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
path
|
str
|
Path to the YAML config file. |
required |
Returns:
| Type | Description |
|---|---|
Pipeline
|
Configured pipeline ready to run. |
Source code in XSpect/controller/pipeline.py
run(cores=1, batch_size=2000)
¶
Execute the pipeline.
- Creates an experiment from config
- For each run number, creates a spectroscopy_run and executes pipeline steps
- After all runs, executes reduction steps
- Populates self.results
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
cores
|
int
|
Number of parallel workers for batch processing. |
1
|
batch_size
|
int
|
Number of shots per batch. |
2000
|
Source code in XSpect/controller/pipeline.py
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enable_logging(level=logging.INFO, log_file=None)
¶
Attach handlers to the XSpect logger so pipeline progress is visible.
Call once before Pipeline.run():
from XSpect.controller.pipeline import enable_logging
enable_logging() # stderr only
enable_logging(log_file="xspect.log") # stderr + file
enable_logging(log_file="xspect.log", level=logging.DEBUG)
Safe to call multiple times; it will not add duplicate handlers.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
level
|
int
|
Logging level (default logging.INFO). Use logging.DEBUG for per-step lines. |
INFO
|
log_file
|
str or None
|
If given, also write logs to this file (appended). Worker subprocesses do NOT inherit this handler, but the main process logs every batch's completion, so the file captures full pipeline progress including the point of any hang/OOM. |
None
|
Source code in XSpect/controller/pipeline.py
XSpect.controller.config_parser
¶
YAML configuration parser for XSpect pipelines.
Parses a YAML file into frozen dataclass structures and validates that all referenced steps exist in the registry.
ConfigValidationError
¶
parse_yaml(path, validate_steps=True)
¶
Parse a YAML pipeline configuration file.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
path
|
str
|
Path to the YAML file. |
required |
validate_steps
|
bool
|
If True, validate that all step names exist in the registry. |
True
|
Returns:
| Type | Description |
|---|---|
PipelineConfig
|
Frozen dataclass with all configuration sections. |
Raises:
| Type | Description |
|---|---|
ConfigValidationError
|
If the YAML is missing required sections or contains invalid entries. |
Source code in XSpect/controller/config_parser.py
XSpect.controller.batch_manager
¶
Batch manager for parallel pipeline execution.
Splits runs into shot-range batches, optionally parallelizes via multiprocessing.Pool, and reconverges batch results.
reconverge_results(batch_results)
¶
Merge results from multiple batches by summing numeric arrays.
For numpy arrays: sums across batches (appropriate for photon-counting spectroscopy where batch spectra should be summed). For scalars: sums them. For non-numeric values: takes the last batch's value (geometry axes, etc.).
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
batch_results
|
list[dict]
|
List of attribute dicts from each batch. |
required |
Returns:
| Type | Description |
|---|---|
dict
|
Merged results with summed arrays. |
Source code in XSpect/controller/batch_manager.py
run_batched(run, pipeline_steps, cores=1, batch_size=2000, detector_configs=None, scalar_keys=None, precomputed_attrs=None)
¶
Execute pipeline steps on a run with optional batch parallelism.
If cores == 1, runs sequentially without spawning a Pool. If cores > 1, splits into batches and uses multiprocessing (reloading data from HDF5 in each worker to avoid pickling large arrays).
After all batches complete, reconverged attributes are set on the original run object so downstream code can access them.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
run
|
spectroscopy_run
|
The run object. Must have a total_shots attribute or equivalent. |
required |
pipeline_steps
|
list[StepConfig]
|
Steps to execute on each batch. |
required |
cores
|
int
|
Number of worker processes. |
1
|
batch_size
|
int
|
Shots per batch. |
2000
|
detector_configs
|
list of tuples
|
[(hdf5_path, name, transpose), ...] for parallel reloading. |
None
|
scalar_keys
|
list of tuples
|
[(hdf5_path, friendly_name), ...] for parallel reloading. |
None
|
precomputed_attrs
|
dict
|
Scalar/axis attributes pre-computed on the full run (e.g. ccm_bins, ccm_energies, ccm_bin_indices). Static attributes are copied directly into each batch; per-shot arrays (shape[0] == total_shots) are sliced. |
None
|
Source code in XSpect/controller/batch_manager.py
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split_into_batches(total_shots, batch_size)
¶
Split a range of shots into contiguous batches.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
total_shots
|
int
|
Total number of shots in the run. |
required |
batch_size
|
int
|
Maximum shots per batch. |
required |
Returns:
| Type | Description |
|---|---|
list of (start, end) tuples
|
Each tuple defines a half-open range [start, end). |